Polishing of fuel is done routinely... No one can afford to throw away $4 fuel on a regular basis
Here is one resource
http://www.trawlersandtrawlering.com/ho ... tnwil.html
You can spend thousands on a system - or you can be thrifty and sensible
You need
1. pump
2. filter
3. some fittings and lines to put it together
4. hoses to go into the tank
The basics are
suck some fuel out
push it through a filter (or two)
squirt it back into the tank
This can be a two step program of pull the fuel out, filter it, push the cleaned fuel into a storage drum, pump clean fuel back into boat tank when your storage tank is full (fifty gallon drum?) Repeat until fuel looks clean... Cheap, easy, labor intensive
Or this can be a continuous process where the pump runs constantly while dumping the cleaned fuel right back into the boat tank... Takes a few more dollars for fittings/hoses and time to rig the intake and return lines for continuous pumping...
Pumps can be had at the local tractor supply store, or West marine, or auto stores, internet, etc... Whether the pump is 12 volt or 120 volt depends on your situation and whether you ant the polishing system permanently running on the boat or a one time installation... Any pump rated for gas will be 100% safe for diesel... The reverse is not necessarily true..
You can go nuts over filters... Gulf Coast, etc. are expensive for the canisters but the replacement paper towel or toilet paper rolls are cheap... And they work well...
Spin on filters are the best compromise... You will need the base to spin a filter onto - which will cost only a fraction of a GC canister...
Here is one source:
http://www.fleetfilter.com/filters/wix- ... bases.html
Some folks will suck you into discussions of Microns with religious fervor... Back slowly away while maintaining eye contact as they can be dangerous if their predator instinct is aroused by overt fleeing... Forget microns...
Buy a pump, two filter bases, four filters (or more), and fittings and hose to put it all together... The two filter bases are plumbed in series, a pre filter and a post filter... The pump should be pushing the fuel through the filter, not sucking it through...
Once the system is running watch the output flow... When it starts to show slowing (or the output fuel is not as clear as it was) then throw the pre filter away, move the post filter to the pre filter base, put on a new post filter, and away we go again...
Now, for a gunked up tank - as apposed to simple contaminated load of fuel - continuous pumping is the best way... Make the hoses large and keep the flow as high as you can... You want the fuel to roll and agitate so it 'scrubs' the gunk off the inside of the tank and carries it to the filters...
Uuunhhh, just read what I wrote... Sorry about the verbosity...
While I am good a cobbling things together, I would not use anything meant for water filtering on fuel...
cheers...