I wouldn't be surprised that the whole mold was sprayed with the accent color. In building boats, the mold is cleaned and waxed with a release wax. Then the gel coat is sprayed on. Next an opaque color gelcoat or resin is sprayed on, to keep light from shining thru the hull (People don't like to see light thru the hull!). There is no more white beneath the opaque color coat.
The Gel coat is sprayed on, and may not be a constant thickness (I have found that to be the case in the plugs I have pulled, that the white gel coat thickness varied).
If C Dory does not have the gel coat (and I got two cans of gel coat with my boat for repair), then Spectrum color does have good match. I suggest this rather than trying to match with West Marine and a color kit--although it can be done.
I ran thru the whaler article--it is good.
Be sure and spray on the gel coat with a Preval sprayer, if it is a large area. You can thin it some. Also coat the area with PVA, which occludes air and accelerates the curing process--putting a plastic wrap will do the same thing.
I had to a lot of gel coat repair on an 18' CC I got at Salvage from Hurricane Ivan--you cannot tell where the repair was one. I used the Specturm gel coat to match.
When we were building boats, we had to do a number of modifications after the hull was molded, or fix defects--this happens. Gel coat repair is a bit of an art, but is not all that complex technically.