Well, definitely maybe I guess would be my answer. You have to actually look at the wires on each battery, figuring you have two on board, and see where the wires run in relation to your selector switch. Some items may even be straight wired to your battery as to "always be on". Also, take a look at exactly what type of batteries are in your boat. Could be a crank battery, a deep cycle battery or a multi-purpose battery.
Let's just say Battery # 1 is a crank battery. Good for sudden, sharp spiked demands like cranking the motor. (shorter demand spikes now that we have sweet starting 4 stroke motores)
Then, Battery # 2 is a deep cycle, house battery for things when on the hook. Radios, reading lights, an inverter for the coffee pot or microwave without starting a gen set....
Or, both batteries "could be" a multi-purpose battery.
Each individual boat has the possibility of being something different and/or a mix of it all. That said, some would, or could, run two multi purpose batteries wired in parallel as to give two individual 100 Amp-Hour batteries the same 12 volt system, but, double the Amp-hours to 200....as to make each individual "hit" from any source needing power, a smaller percentage hit thus allowing the batteries as a "team" to last longer, ....but,....both be discharged, not leaving you a for sure crank battery.
There is no "for sure" answer without looking in detail at YOUR boat and YOUR switches and how they are ran.
Take a peak at TRAILER BOAT Magazine, May 2010 issue. Great article on batteries.... and a good read.
Sorry, no for sure answer here.
The way Charlie wants his boat wired could be different from how Bob wants his boat set up which could be different to how any of the Rogers wants their boats set up....and, same could be true for folks that ran the stuff in your boat.
Byrdman