I reviewed the thread and the videos again. Thanks for a comprehensive history of your work!
The question in my mind, is there any other penetration of the inner side of the hull which allowed water to penetrate the inner hull, and get to the Balsa core beyond the water tank? You had the screws holding the water tank down. I don't see any wires so there should be no screws into the core of the hull under the table.
Any water leaking from the water tank would be kept in the compartment where the tank was, with the fiberglass interior having been fully tabbed in as you found by cutting along the tabbing at the bottom of the area where the glass tank was secured. Could it have been water leaking in from around the water fill, or from a loose hose to the fill of the water tank? Still this does not seem like it would have been enough to cause the damage that you have, unless a considerable amount of water stood there for a long time. Looking at the balsa as it is in the Video #4 & #5, it is definitely separated from the hull side of the core--and that suggests to me that both freeze / thaw cycles and boat pounding were involved. Under normal conditions the balsa is firmly adhered to the inner surface of the hull The fiberglass interior gives more stiffness to the hull, than the plywood interior does.
Back to the flat cockpit deck and the aft cabin bulkhead; It looks as if the aft cabin bulkhead is glassed into the inner surface of the hull inside the cabin. I believe it should be well tabbed in on the cockpit side, under the flat deck also. I have seen boats where this was absent, or broken down.
Is there water under the flat deck? Many of the owners who have these flat elevated decks have put inspection plates in to remove water. But you would need holes to allow access--and there should be none there. Also no screws into the inner floor there. It looks as if you have the straps properly screwed into the glassed in cleats and not the core. (maybe outboard into the core?) The unused thru hull fitting aft is a concern--and should be opened up to be checked.
Personally I would go back with Balsa core. I would want the entire hull to be the same material. The balsa is going to be less weight than the Coosa board. (Urethane foam with fiberglass fibers, or the "BlueWater" with woven roving and glad fibers.). If you want you can put glass and epoxy "barriers" between sections of balsa core. I am aware of boats made entirely of balsa (planked), then glassed inside and out and after over 40 years absolutely no core problems. In the 20 boats we cut up (Hurricane Ivan damaged boat) in our studies on delamination and instrumentation, there were many up to 50 years old, with absolutely no core damage, and good adherence of the balsa core. Of course these had no holes in the outer laminate, and had used solid glass or other materials in the way of cleats and other penetrations.
As for cutting in by the door, if you cannot reach its with the Fein type blade, you may be able to use a flexible shaft on a Dremel or Rotozip type of tool, and a rotary blade or cut off wheel. Also air powered die grinders work well getting tight places, especially with a small cut off wheel. The tabbed in glass often separates well, when you have cut most of the other surfaces, and one or two areas remain. The tab bonds are secondary, and not as strong as primarily lay up bonding.
Keep up the great work, along with good videos.