Sorry I did not see this thread sooner. I have been looking into this for at least a year. I am on the RV threads and have RVed for over 45 years, so I am very familiar with the RV top type units. I also had a 13,500 BTU RV unit on the top of an enclosed bridge of my Symbol 42 foot MY.
I have also owned a several boats with the built in marine air conditioners, and know the problems that they bring. One of the biggest is jelly fish, debris or mud, clogging up the intake. They are difficult to run at speed on a cat or C Dory, and end up with a "scoop" under the water--they have to have a condensate drain, as well as overboard water drain.
I also tried (briefly) one of the "hatch" AC units--too heavy, difficult to move, not effecient. I cannot see that the under the table unit gets away from many of these problems and didn't consider it because of the disadvantages.
After a good deal of research, including lots of time looking at what the Honda EU 2000 could handle I decided on the ColemanPolar cub. Yes, it does detract--but at times you can put the dinghy over it (probably not when running the AC). I did have a condensate drain on the Symbol, but with the Tom Cat 255, having a lip, and I will be putting a Bimini with an awning rail on the aft lip, the condensate will not be a problem.
The Coleman is the only roof AC unit I can find which reliably is run with the Honda EU2000i. There are some who claim that a high effeciency 11,000 BTU can be run, but others who say it cannot not be done. No way a 13,500 will run from a Honda 2000 reliably. Lots of RVers have tried it with easy start capacitiers etc. I have a high effeciency one on a 30' RV and it will run (most of the time) on a 15 amp circuit--but the mains power will take a surge better than a Honda. It bogs down the Honda and is not satisfactory
So, I own a Polar Cub. It is not yet installed. I just had eye surgery, so I cannot work on the boat for a week or so. However I have outlined what I think is necessary for re-inforcement on the roof, and relayed this to Jeff, with the suggestion that C Dory make a mold for the upper and lower parts. This would make the installation much better--I don't like pulling the crown out of the top of the C Dory cabin roof. I am building flat moldings on the top and bottom of the roof, maintaining the arc.
I also am putting in 12 volts as well as the 110 V. There is a nice cowling for the Fantastic Fan (12" blades, reversiable 3 speed motor and thermostat)--which one can put over the 14" opening when going into colder weather or during the winter (not a bad idea to replace the gasket under the roof air each year anyway). This fan can be run during rain or under way in heavy weather if you use the proper shroud.
The RV air conditioners are not "marine", but they do fine in the Marine environment as the C Dory is used. The Army Corp of Engineer uses them on many of their small boats. The one I had on the Symbol was still gong strong after 7 years in Florida....I don't see that as a problem.
As for asthetics--the biggest issue. I will have the Radar slightly higher than the shroud of the AC--and there is also a loudhailor speaker low in front of the Radar, Thus the roof line is broken up, and the eye doesn't see just the AC unit.
Finally, as to the amount of cooling needed. I have 13,500 in a 30 foot RV and it is fine in Las Vegas in the summer...Runs all of the time, but cools adequately. I have a 5000 BTU unit in a Road Trek Class B (19 foot cabin). It is adequate for me in the bunk.
I will be insullating the roof, and making panels of reflective insullation for all windows, so that I can cool the boat during the day. Also shade is important. Shade cloth can be put over the roof, foredeck and windows.
In summary, I think that the 8100 BTU Coleman Polar Cub is probably the best bet--there are some compromises, but to be able to run the generator on "economy", and charge batteries while I am cooling makes up for those.