Are you running two 6 volt golf cart batteries in series for the house bank? (It has been done, but an unusual set up for a C Dory--especially an early model)
What size are the batteries (in amp hours or residual capacity). What case size are they? Are all three batteries identical (size, capacity, and age?)
What is your cruising style? (On the hook most nights, rare to a marina, or in a marina, and using all sorts of 12 volt appliances etc? ) There are a number of factors to consider before deciding on what battery would be best for your use.
The guest which have been standard on the C Dory for the last 15+ years is actually a relatively poor choice for most of us. They are made to charge batteries between uses. Many of us have fairly high demands, even in a slip--(stereo, lights, electronics etc). Your battery charger should be capable of putting out what your average use is--
I like one which is 15 to 20 amps at least. I am using combiners on all of my boats, so that unless you turn the combiner off, a single bank charger is what you effectively have. There are very few chargers which actually sample each bank and prorate the charge accordingly.