What you are asking is something, I’ve been doing similar to for years with my twins, when running one motor during displacement speed cruising & setting the switch to all, combining both my batteries & have the single running motor charge both batteries at the same time, while both batteries are used as house & start.
I’ve been running twins with the 1,2 & all switch & 2 identical batteries now for 23 years. The batteries, after the original set have all been AGM dual purpose & for me both are used as such. When running both motors on plane, I will set whatever single battery is at the highest charge as the house battery. At displacement speed where, I normally only run one motor, they are periodically switched, while the batteries are left combined, unless one has a significantly less charge. The batteries are always combined if using the windless or when starting the Wallas stove with the motors off.
I don’t have to be near as watchful about the batteries charge state & their switch selection with the replacement twin Honda 60’s as they have more than double, the alternator output over the old Honda 40’s. Also with the 1999 Honda 40’s if the batteries were combined with both motors running & sea state or other causes created excessive throttle adjustments, this could cause problems with the coil charge electrical grid. On two different extended SE Alaska cruises, I burned out a charging coil due to this. I’ve read this problem has been corrected on the newer Honda motors, but don’t know for sure if it has, so I’m still very cautious about combining the batteries when running both motors.
I realize the simple 1,2 & all switch by itself is outdated compared to what’s available & one has to put extra consideration into individual battery state of charge, but so far, I prefer it’s simplicity combined with my lower overall house power use, than the newer more advanced monitoring systems. All my batteries thus far have lasted a minimum of 6 years before replacing, so after 23 years of not having to replace batteries due to failure, while cruising, I have no desire to change the system or my mode of operation at present.
Jay